Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs77850688 | chr3:107818444 | G/A | 4.55E-15 | 485 | 15.93 | 15.03 | 7.67 | KM Plot |
| THCA | rs77854317 | chr1:91760864 | T/G | 8.05E-6 | 486 | 15.68 | 16.97 | 17.77 | KM Plot |
| THCA | rs77886769 | chr2:48038948 | C/T | 1.24E-7 | 486 | 15.3 | 18.33 | 8.27 | KM Plot |
| THCA | rs77890593 | chr16:2943479 | C/T | 0.000159 | 483 | 15.2 | 17.13 | 15.4 | KM Plot |
| THCA | rs77890961 | chr3:96787836 | G/A | 2.19E-10 | 489 | 15.87 | 15.17 | 24.65 | KM Plot |
| THCA | rs77899856 | chr5:96206089 | A/G | 3.31E-6 | 487 | 15.17 | 16.9 | 20.83 | KM Plot |
| THCA | rs77902909 | chr6:24478715 | G/A | 1.54E-11 | 486 | 16.38 | 14.7 | 8.88 | KM Plot |
| THCA | rs77907093 | chr8:143841347 | C/T | 6.56E-7 | 480 | 15.3 | 18.18 | 33.97 | KM Plot |
| THCA | rs7793804 | chr7:129973050 | G/T | 8.36E-5 | 488 | 16.63 | 15.63 | 14.83 | KM Plot |
| THCA | rs77940410 | chr11:62582338 | T/C | 7.7E-5 | 488 | 16.22 | 14.33 | 14.27 | KM Plot |
| THCA | rs77945714 | chr6:24424522 | C/T | 5.55E-15 | 488 | 16.37 | 14.85 | 11.07 | KM Plot |
| THCA | rs7794711 | chr7:64237738 | C/T | 6.58E-9 | 479 | 12.6 | 14.65 | 16.6 | KM Plot |
| THCA | rs77948206 | chr6:24429808 | C/T | 5.64E-7 | 482 | 16.33 | 14.92 | 9.25 | KM Plot |
| THCA | rs77966926 | chr2:48050196 | T/C | 1.14E-7 | 487 | 15.3 | 17.93 | 8.27 | KM Plot |
| THCA | rs77969925 | chr10:104649357 | C/T | 3.34E-8 | 487 | 15.63 | 17.1 | 19.1 | KM Plot |